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Following is the list of all the primer sequences used to perform Real Time quantitative RT-PCR, as explained in the paper.
| Primer | Sequence |
| BDNF F | TAAATGAAGTTTATACAGTACAGTGGTTCTACA |
| BDNF R | AGTTGTGCGCAAATGACTGTTT |
| Calcium ATPase F | GCATGCTCCTCCTTCAGAACAT |
| Calcium ATPase R | AATTTTCCGGGCATTTATTTCA |
| CLK-1 F (*) | GATGAACACAGTTCTGCTGGCA |
| CLK-1 R (*) | TTCAGTATCCTGGGAAAGCATGA |
| CLK-1 F (*) | GAAAGCATGAATTCCTTTAGAGGTTTAC |
| CLK-1 R (*) | CGACTAGACTGGGATGAACACAGTT |
| c-02o6 F | AACCCATTTTCTCTGAGTAATTCATTGT |
| c-02o6 R | GCTGGTCTTCTGGATTGTTACTTATTTAAT |
| survival of motor neuron F | TCTGAAGTGAAGCTCTTAGTGGACA |
| survival of motor neuron R | GCTAACCAAGCAGATTAATAAATTCAAA |
| hsp 90 F | CAGTGATGATGAGGCAGAGGAA |
| hsp 90 R | CTTCAATCTTGGGCTTCTCTTCA |
| cyclophilin F | CAAATGCTGGACCCAACACA |
| cyclophilin R | TGCCATCCAACCACTCAGTCT |
| 60 s prot L44 F | TGGATCACCTGGCCCTTTC |
| 60 s prot L44 R | GGATGCTGGCCATTAAAAGATG |
| c-02o8 F | GAGAAGGGCTACAAAGTCCTGAAT |
| c-02o8 R | AGACGACCTATTTCAATTTATCTTAATCTCTA |
| c-02o8b.F | AGAACGTCTTAGGCTGAGATGAATC |
| c-02o8b.R | TTCAGCATTAGGCTGATCTTCAATATA |
| NGF F | ACATCAAGGGCAAGGAGGTG |
| NGF R | ACTTGGTCTCTACTGTTTGAATACACTGTT |
| Solute carrier family 25 (SLC25A3) F | CCTCCACCTGAGATGCCAGA |
| Solute carrier family 25 (SLC25A3) R | GATTCAGTCCACATTTGCTTTGAT |
| Multifunctional protein ADE2 F | ATGAGGGAAAAACGAAAGAAGTCTAT |
| Multifunctional protein ADE2 R | CGCTGTAATCTGGTCCTTGGA |
| Protein phosphatase 1 (PPP1CB) F | AAGCACCCAATACCTACAGTTGACA |
| Protein phosphatase 1 (PPP1CB) R | TTTTCTCCCTCTGTTCGAAGGAT |
| CalmodulinF | TGTCATTGTCCTGAGACCTTATTTTAGA |
| CalmodulinR | AGTTTAGATGTGCAGAAGGGCTTAGA |
| Potassium channel (KCNJ13) | TTGAAGCAATAGTCCGGTTTCAA |
| Potassium channel (KCNJ13) | CAGTTTTATGAGGATGTTCACTGAATGT |
| c-07b12 F | TCTGGGTCTAGGACTCTTAATTGCA |
| c-07b12 R | CAGCTGGCAAATGGTAATTAAGAA |
| smad interacting | GGATCATTGACACGGCACTACA |
| smad interacting | TCCCTGAGTATGCATTGACTTGATA |
| Contig 202 F | TTTCCAGTCTATTCATGACATTCAACA |
| Contig 202 R | TTCAAAAGTAAATCAATCCCCTAGAAGT |
| Contig 251 F | CTGCCAGTGTCTTTATTAGTGGTCAA |
| Contig 251 R | GCCTATTTGGAGTTCCCTCTTCTA |
| mGluR2 F | CCTGCTGGGTGGCGTCT |
| mGluR2 R | TGGACGGCTTGGCGAT |
| m6a F | ATTAATGGAAGCCTTTTCAAATATATCAT |
| m6a R | CTAACCCCTCAGAAGTTGTTTTACCTA |
| Contig 282 F | CACAAAGAAAGGCTGAGCTACTGAT |
| Contig 282 R | TTGAGTCACATTGATTTCAGCAGA |
| Contig 257 F | TGTTGGAGCAGATGTATTGGATTTA |
| Contig 257 R | CACTCTTTTTGCTGTGGTGAAAGAT |
| Contig 217 F | AAGAAACGAGCAAAACAATGTGTTAC |
| Contig 217 R | AAGAGTCACCCAAGGAAAGAAAATT |
| Contig 138 F | GGGTAATAATGGGACAAAAGCTTAGT |
| Contig 138 R | TTGCATGATCTGCTCTCCCTTA |
| Contig 136 F | TGGTCTGGATGTTGCAGCTAGA |
| Contig 136 R | TTTCACTTCTCCCATTCCACACTA |
| Contig 114 F | CAGACTGCATGCTTACCATAACATT |
| Contig 114 R | TCGCAGTTTGCACACAATTGT |
| Contig 64 F | TCTCCTTCCCATTCGCTCAT |
| Contig 64 R | TGTTCTCCTTAATTTCTCTAATTCTCAAAG |
| t-06b11 F | GATATAACTGCTCCCATTTTACAGATA |
| t-06b11 R | GCATTCAAGTCTCAGAAGGGACTATGA |
| t-07g12 F | TGAACATTATGAGCCTCAGTTGATATT |
| t-07g12 R | AAACTTTAAGGAAAATTTGGCAATTCA |
| c-02h3 F | CAGCTGGATTTAATTATACATGCCAAT |
| c-02h3 R | GAGAGCCAAGGTCAAATTTAAG |
(*) Expression of CLK-1 was measured using two different pairs of primers, showing similar results.
All sequences have been subjected to similarity searches
against different databases. A summary of the results for each
sequence is available.
If you are looking for a specific clone or contig (e.g. clone 02o8, Contig304) use the form below. Note that if you're searching for a clone that happens to be a member of some contig, you will get directed to the page for that contig.